PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022212
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 216aa    MW: 23685.2 Da    PI: 5.3093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022212genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183585155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  Cla022212 35 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 85
               68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-133585IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-213694IPR016177DNA-binding domain
SMARTSM003801.0E-343699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-313694IPR001471AP2/ERF domain
PROSITE profilePS5103223.2093693IPR001471AP2/ERF domain
PRINTSPR003678.0E-103748IPR001471AP2/ERF domain
CDDcd000184.67E-313795No hitNo description
PRINTSPR003678.0E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSPSETESST TSSSSSSDSN KKPKRINNNS NSKHPVYRGV RMRNWGKWVS EIREPRKKSR  60
IWLGTFPSPE MAARAHDVAA LSIKGNSAIL NFPELVHLLP RPVSLAPRDV QAAAAKAAHM  120
HNLSSNTNLN NINTNSSSAF SDELTEIVEL PSLGTSYDGG GGEFVFVDSE LESAAWLYAP  180
PWLQSLEEEY DDDNGDCGTL GMGFLSNGFK GFLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-183193972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1259741e-143AB125974.1 Cucumis melo CMe-DREB1 mRNA for DREB-like protein, complete cds.
GenBankLN6818231e-143LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-143LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951619.12e-94dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD36e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0LPS62e-89A0A0A0LPS6_CUCSA; DREB-like protein
STRINGXP_004172022.14e-90(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-61ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]