PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022354
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 164aa    MW: 18459.9 Da    PI: 8.501
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022354genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-19755254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aaka+++a++ + 
  Cla022354  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARLMC 55
               69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.60E-32664No hitNo description
PROSITE profilePS5103220.916764IPR001471AP2/ERF domain
SMARTSM003806.9E-41770IPR001471AP2/ERF domain
PfamPF008472.0E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-34764IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21766IPR016177DNA-binding domain
PRINTSPR003674.2E-11819IPR001471AP2/ERF domain
PRINTSPR003674.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAAKAYDEA ARLMCGPRAR  60
TNFPFNANDS NSSSSKLLSP NLTAKLHRCY MASLHLQKPA THRFNSGADA AGIKPFTAEA  120
KTQTETAHQP FVALEEDHIE QMIEELIHYG SVELCSIVPP SPAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18870669ATERF1
3gcc_A4e-18870669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-145LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-145LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445254.14e-98PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S3BBS39e-97A0A1S3BBS3_CUCME; ethylene-responsive transcription factor ERF003-like
STRINGXP_008445254.11e-97(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]