PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022431
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family E2F/DP
Protein Properties Length: 440aa    MW: 50245.5 Da    PI: 7.3544
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022431genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.19.7e-26155220171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL+ lt+kf++l++++e+g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek+  n+irwkg
  Cla022431 155 RYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVL---KV--QKRRIYDITNVLEGIGLIEKTTTNHIRWKG 220
                6899******************************...88..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-27152222IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-16155218IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-33155220IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-24157220IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.12E-37231335No hitNo description
SuperFamilySSF1440741.88E-26232335No hitNo description
PfamPF164212.8E-25236335IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSNAVEDLIL RHRHSDFRFQ LLRSHSHHRD MSSSSSSSSS APALPPLCFL QYHRPSPPSD  60
QSNACDGRLA PDTHSTVATL DLKRAYDIDE SEALASRQVV ASEQRMRSND SSCEPVSSAN  120
EKQNKKLKLQ KNSKSRTQKS IDEPVDGPNL STNGRYDSSL GFLTKKFIRL VQEAEDGTLD  180
LNKTADVLKV QKRRIYDITN VLEGIGLIEK TTTNHIRWKG CERRGPQELN DEVGKLKDEV  240
KSLYAEERRL DELIRMKQEL LRNLEENANR RKNLFITEED ILRIPCFKNQ TLIAVKAPQA  300
SCIEVPDPDE EACFSERQCR LIIRSTTGPI DLYLLRAAKQ GPEENTSKQA KLSSVQHKNP  360
NIYTNNTCSP FQEFHGMQRI FPLHNNVGLN LNAKSRHEFN VLPIIFNFPC ALFLQIDDDY  420
WFQSNSQVSI THLWGEEHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22152220473PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193LKVQKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818233e-87LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132573e-87LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444795.10.0PREDICTED: transcription factor E2FC isoform X3
TrEMBLA0A1S3BAQ00.0A0A1S3BAQ0_CUCME; transcription factor E2FC isoform X3
STRINGXP_008444793.10.0(Cucumis melo)
STRINGXP_004152759.10.0(Cucumis sativus)
STRINGXP_004167900.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-81E2F/DP family protein