PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022458
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 193aa    MW: 21252.3 Da    PI: 5.2611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022458genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-181362255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a+++a+++l+g
  Cla022458 13 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDNAARRLYG 62
               69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-291272No hitNo description
PROSITE profilePS5103222.0231370IPR001471AP2/ERF domain
SMARTSM003803.2E-361376IPR001471AP2/ERF domain
PfamPF008475.8E-131362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-301371IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-211371IPR016177DNA-binding domain
PRINTSPR003671.1E-91425IPR001471AP2/ERF domain
PRINTSPR003671.1E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRGKGGPENA SCTYKGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSHDAA LAYDNAARRL  60
YGSDAKLNLP HLSPVSASSS SSDNVAANSN SNSNANAIVE DVASSVSHET NNNNTVSPKK  120
RFREEEEEQI GGLWRAMSIS LDDSIWVEAA MSLDFPIVME HEQDHHHQGF FAANLMETNG  180
NGGCGWDTLQ WCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-201470663ATERF1
3gcc_A6e-201470663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818233e-85LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132573e-85LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444762.17e-79PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ22e-46DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1S3BAM02e-77A0A1S3BAM0_CUCME; dehydration-responsive element-binding protein 2D
STRINGXP_008444762.13e-78(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]