PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022507

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 459aa MW: 47214.4 Da PI: 8.9977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022507	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cla022507 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	15.9	3.7e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Cla022507 138 WKCERCSKKYAVQSDWKAHMKTC 160 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.8E-7	61	84	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	61	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	62	84	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.2E-5	62	84	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	96	103	133	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	8.8E-7	133	159	No hit	No description
SMART	SM00355	77	138	158	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MVSAENNSQS AKVVASSSPG GEIEIIDSVT PAKKKRNLPG MPDPAAEVIA LSPKSLLATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSNEIRK RVYVCPEPSC VHHNPARALG 120 DLTGIKKHFS RKHCEKKWKC ERCSKKYAVQ SDWKAHMKTC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA FASSDSNVMA TAAAAGVAVT SSALATVPLS PALSIQSSEA PDIPMGPPPL 240 TPAATSLTSA VACNVNKTSP TNGGGTSVFA GVFASSPPIV TSAAAPNPPH PLTTAVSRSE 300 GGNEPLTTVI EPTSLSLSTS LFLSCRASAS SGSTSASSIF QNHPPHYSPS LQPAAMSATA 360 LLQKAAQMGV TSSNASSLLR ASGLSLSPSP GPTISMTAGL GLGFGSEPTT RDLLGLGMGG 420 GGGGGGGVSG GGLSALFTSF DGCDVEAASP YGGGGNNGL

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MVSAENNSQS AKVVASSSPG GEIEIIDSVT PAKKKRNLPG MPDPAAEVIA LSPKSLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSNEIRK RVYVCPEPSC VHHNPARALG  120
DLTGIKKHFS RKHCEKKWKC ERCSKKYAVQ SDWKAHMKTC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA FASSDSNVMA TAAAAGVAVT SSALATVPLS PALSIQSSEA PDIPMGPPPL  240
TPAATSLTSA VACNVNKTSP TNGGGTSVFA GVFASSPPIV TSAAAPNPPH PLTTAVSRSE  300
GGNEPLTTVI EPTSLSLSTS LFLSCRASAS SGSTSASSIF QNHPPHYSPS LQPAAMSATA  360
LLQKAAQMGV TSSNASSLLR ASGLSLSPSP GPTISMTAGL GLGFGSEPTT RDLLGLGMGG  420
GGGGGGGVSG GGLSALFTSF DGCDVEAASP YGGGGNNGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-32	135	189	4	58	Zinc finger protein JACKDAW
5b3h_F	5e-32	135	189	4	58	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444696.1	0.0	PREDICTED: protein indeterminate-domain 1-like
Swissprot	Q9SCQ6	1e-121	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1S3BBP7	0.0	A0A1S3BBP7_CUCME; protein indeterminate-domain 1-like
STRING	XP_008444696.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]