PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022530
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 157aa    MW: 17603.2 Da    PI: 10.5092
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022530genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.91.9e-3260113255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cla022530  60 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 113
                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-1657114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-2958114IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-2460113IPR006447Myb domain, plants
PfamPF002495.7E-861112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDYTTTAPPP PPLPDLSLHI SPPSDSGNHY LKNQQPQIYG SHLKRGAKMG FGIKRSIRAP  60
RMRWTTTLHA HFVHAVQLLG GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKSTDKA  120
TDSAMKNQRQ EIEASGVSNC ENSKPPLTMW KSPNQQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486917e-58AY048691.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI4 (KAN4) mRNA, complete cds.
GenBankAY0889647e-58AY088964.1 Arabidopsis thaliana clone 114074 mRNA, complete sequence.
GenBankBT0260537e-58BT026053.1 Arabidopsis thaliana At5g42630 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444661.19e-86PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV57e-47KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A1S3BAW62e-84A0A1S3BAW6_CUCME; probable transcription factor KAN4
STRINGXP_008444661.14e-85(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.25e-50G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]