PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022532

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 248aa MW: 25767.3 Da PI: 8.1194

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022532	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	28	86	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s Cla022532 28 DPLPCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRDVPVGGGSRKNSKRS 86 6789***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-22	34	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MPSESANRTN SRPQPQHTMG FPPPPQSDPL PCPRCDSLNT KFCYYNNYNL SQPRHFCKSC 60 RRYWTHGGTL RDVPVGGGSR KNSKRSRYHN INNTPSSASA SSSTSVSSST SASSSSSVSL 120 LPTAAALNDI NDTIPPPGTF TSLLSSQASG FLALGGYASA SGSGHPPAAF DDMGFALGRG 180 LWGTACTYPE VGDLVGSYAA AGAPETSSSG YNAWQMNATD GGGNGGVVDG DLLGWPDLAI 240 SMQGKSLK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444659.1	1e-127	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A1S3BAC9	1e-126	A0A1S3BAC9_CUCME; dof zinc finger protein DOF1.6-like
STRING	XP_008444659.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-31	Dof family protein