PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022557

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Protein Properties

Length: 224aa MW: 25248.2 Da PI: 10.5445

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022557	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.4	6.9e-15	127	207	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k +++s+v+ +l lp +f++ h +++ ++ +tl de+g +++ + rk++ l++GWk+F a++L +gD vvF++++ Cla022557 127 FIKSMLQSHVSGGFWLGLPSHFCKIH-LPN-RDGVMTLIDEDGDEYSTIYLARKTG----LSGGWKGFSVAHKLADGDAVVFQFIKP 207 89*******************666.443.4458***********656665....*********************8874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.81E-22	120	215	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.1E-17	121	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.76E-22	125	210	No hit	No description
Pfam	PF02362	1.6E-12	127	210	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.644	127	218	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-18	127	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGIANLSYEE CRRKRLEENK KRMEALNLPL LSQALLDSSP SKSSPSKLTK PRVTQKQLVV 60 VRRSSRVAKQ SAPVYAEVVV NRVVIPRRIS KARDFSNRVY ASDDARKNAF ERAEQLQSGL 120 DPNYPNFIKS MLQSHVSGGF WLGLPSHFCK IHLPNRDGVM TLIDEDGDEY STIYLARKTG 180 LSGGWKGFSV AHKLADGDAV VFQFIKPTRC KVIFLHHFAG FKIL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	8e-83	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	8e-83	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444633.1	1e-141	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	2e-69	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1S3BAR2	1e-140	A0A1S3BAR2_CUCME; B3 domain-containing protein At5g42700-like
STRING	XP_008444633.1	1e-141	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-58	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]