PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022590
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 230aa    MW: 26348.8 Da    PI: 9.4567
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022590genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.9e-2196155357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eq+ +Le l+ +  r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Cla022590  96 TRWNPTQEQIGILEMLYSRgMRTPNAQQIEHITAQLgnygKIEGKNVFYWFQNHKARERQ 155
                7*****************99**************************************97 PP
2Wus_type_Homeobox116.41.3e-3796157465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly++G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
          Cla022590  96 TRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQ 157
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.18791156IPR001356Homeobox domain
SuperFamilySSF466891.66E-1392162IPR009057Homeodomain-like
SMARTSM003891.0E-793160IPR001356Homeobox domain
PfamPF000469.1E-1996155IPR001356Homeobox domain
CDDcd000865.72E-696157No hitNo description
Gene3DG3DSA:1.10.10.602.2E-897155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVLSMKVHQF ARGFWDEPSL SLGCKRLRPL APKLQQHNQH PTSDTTTTTL TSFDLKTFIK  60
PDCGPRKLGS SHDHNKDSSS SSSSLQTGVE THPGGTRWNP TQEQIGILEM LYSRGMRTPN  120
AQQIEHITAQ LGNYGKIEGK NVFYWFQNHK ARERQKQKRN SLGLPHSPRT PPPPPIIPTF  180
HTAEDDSPYK RKCLYWGFEC LVEDHNGIMC KKEEGHDRTL ELFPLHPERR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818233e-95LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132573e-95LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444600.11e-129PREDICTED: WUSCHEL-related homeobox 4
SwissprotQ6X7J92e-67WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A1S3BBG01e-128A0A1S3BBG0_CUCME; WUSCHEL-related homeobox 4
STRINGXP_008444600.11e-129(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-61WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]