PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022591
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 143aa    MW: 16339.4 Da    PI: 9.7683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022591genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-182372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Cla022591 23 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPLAAARAYDTAVFYLRG 72
               69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-212381IPR016177DNA-binding domain
PROSITE profilePS5103222.2072380IPR001471AP2/ERF domain
SMARTSM003806.8E-352386IPR001471AP2/ERF domain
CDDcd000182.29E-272482No hitNo description
Gene3DG3DSA:3.30.730.103.1E-302481IPR001471AP2/ERF domain
PfamPF008474.3E-112472IPR001471AP2/ERF domain
PRINTSPR003676.2E-122435IPR001471AP2/ERF domain
PRINTSPR003676.2E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEESVETTVS DKRKQQAGRQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYTTPLAAA  60
RAYDTAVFYL RGPSARLNFP DLILQDMDHQ LLDVSPSSIR KRAIEVGARV DAAAHQTSLR  120
QSKPISDKPD LNQFPDPESS DED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151180272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-154LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-154LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444599.12e-96PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC301e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S3BAR14e-95A0A1S3BAR1_CUCME; ethylene-responsive transcription factor RAP2-1
STRINGXP_008444599.17e-96(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-54related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]