PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022648
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 678aa    MW: 73957.7 Da    PI: 7.0794
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022648genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-12303359155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Cla022648 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 359
                78*******************77776664346655.77******************98 PP
2AP245.91.4e-14402453155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s ++GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cla022648 402 SVFRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 453
                689***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-14303369IPR016177DNA-binding domain
PfamPF008471.2E-9303359IPR001471AP2/ERF domain
CDDcd000185.93E-19303367No hitNo description
SMARTSM003807.6E-22304373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12304368IPR001471AP2/ERF domain
PROSITE profilePS5103217.359304367IPR001471AP2/ERF domain
PRINTSPR003674.3E-6305316IPR001471AP2/ERF domain
PfamPF008473.1E-9402453IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-17402463IPR016177DNA-binding domain
CDDcd000182.28E-24402463No hitNo description
SMARTSM003803.5E-33403467IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17403461IPR001471AP2/ERF domain
PROSITE profilePS5103218.624403461IPR001471AP2/ERF domain
PRINTSPR003674.3E-6443463IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKSMNENENS SNNNNINNSW LGFSLSPHMK MEVTSSDHPY TQHHSHSASN PFYLSPHFNH  60
NNTEIFYGIP DNSSLHHHSA AASLSVMPLK SDGSLCIMEA LSRSQTEGMV PSSSPKLEDF  120
LGGATMGNRG GYFNQNAESE TDKEHSLDLL HRPIRQNQQI LIQNSNQYYS GLVPSSIGIG  180
TCDPQILPAN DDEIPCLRNW VSRSHYSATH NTLEQHITGS ALVNDGSGGG SASIGGMSCG  240
ELQSLSLSMS PGSQSSSFTA SGQISPTGGD GGAVETKKRG AGKLCQKQPV HRKSIDTFGQ  300
RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQGGY DMEEKAARAY DLAALKYWGP  360
STHINFPLEN YQTELEEMKN MSRQEYVAHL RRKSSGFSRG ASVFRGVTRH HQHGRWQARI  420
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISRYDVEKI MASNTLLAGE  480
LARRNKDVEP SSDTTVVPYD SSVAANNNVG IGIGIEINPD DNGANGNGND WKMALYQNPS  540
HQQQVCVAES LDHHHNKSMI VSGGYRNTSF SMALQDLIGI ESLNASTHGI EDDVSKQVTH  600
FSNSSSLVTS LSSSREGSPD KTNLSMPFGK PPPLMASKLI GATSGVGVGA WYPSPQQLRP  660
TAAISMAHLP VFATWNDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142906.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-151CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A0LKW80.0A0A0A0LKW8_CUCSA; Uncharacterized protein
STRINGXP_004142906.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-124AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]