PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022660
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 209aa    MW: 23660.8 Da    PI: 8.5882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022660genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ +v+ +G+  tW + + + g++R++k+c++rw++yl
        Cla022660 14 KGPWSPDEDAILKSYVETHGTAgTWIALPTKAGLKRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP
2Myb_DNA-binding48.32.4e-1569114246
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  + ++ +q+G++   W+tIa+ ++ gRt++++k++w++
        Cla022660  69 GDFTEEEDNVIFNLYNQYGSRqvLWSTIASQLP-GRTDNDVKNHWNT 114
                      789******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.558962IPR017930Myb domain
SuperFamilySSF466891.44E-2512112IPR009057Homeodomain-like
SMARTSM007179.6E-101364IPR001005SANT/Myb domain
PfamPF002491.4E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001674.76E-71662No hitNo description
PROSITE profilePS5129423.5563120IPR017930Myb domain
SMARTSM007177.4E-1267118IPR001005SANT/Myb domain
PfamPF002495.6E-1369114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2270119IPR009057Homeodomain-like
CDDcd001672.35E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRAPCCEKG KVKKGPWSPD EDAILKSYVE THGTAGTWIA LPTKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEDNVIF NLYNQYGSRQ VLWSTIASQL PGRTDNDVKN HWNTKLKKKK  120
LFLAGKTKLQ TQTQTHLRSK PSLLHAPETE FTETTNHRPI SYFAGLDNSV DQLESFSEPG  180
AGGDGRDQWG SMEHWGCDFP PDMICSMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141197107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-50LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-50LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142913.11e-114PREDICTED: transcription factor RAX3
SwissprotQ9SJL79e-62RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A0A0LR011e-112A0A0A0LR01_CUCSA; Uncharacterized protein
STRINGXP_004170771.11e-113(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-60myb domain protein 84
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]