PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022679

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 188aa MW: 21113 Da PI: 7.6232

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022679	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	104.2	1.2e-32	29	125	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk++rrkC++dC+lapyfpa++ ++f+nv+klFG+++vlk+l++l++++r +a++++++eA++ra+d G++++i +lq+++ l+a+ + Cla022679 29 ACAACKFQRRKCSADCPLAPYFPAHRVQDFQNVRKLFGVKKVLKTLADLEPDNRFKAVECIIFEANCRASDLAGGCYKIICELQSEITLLEAQHRIV 125 7***************************************************************************************999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.195	28	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-32	29	123	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNISGDSSGT AAEEGGVKDN NNHPTTQAAC AACKFQRRKC SADCPLAPYF PAHRVQDFQN 60 VRKLFGVKKV LKTLADLEPD NRFKAVECII FEANCRASDL AGGCYKIICE LQSEITLLEA 120 QHRIVLRQLR YCRQTAAISQ SGATSSEFDF NWKPGLISED WIRKENCNLN DRLTMMENEV 180 SFFKALTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-20	24	127	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-20	24	127	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022962555.1	5e-78	LOB domain-containing protein 22-like
TrEMBL	A0A0A0LNK6	2e-72	A0A0A0LNK6_CUCSA; Uncharacterized protein
STRING	XP_008444461.1	8e-72	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-28	LOB domain-containing protein 22