PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022708

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 382aa MW: 43770 Da PI: 6.5174

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022708	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.5	6.4e-27	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmrergf rsp++C++kw+nl k++kk k+++++ s +++ ++++e Cla022708 73 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSCYKEIE 154 *******************************************************************984...445778888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.571	65	129	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	66	131	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-5	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	8.34E-29	71	136	No hit	No description
Pfam	PF13837	7.4E-21	72	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MYLSDKPRPI DIYKEEGSRD MMIEVASNGD HHIQPHQPQP QPQQTHQQHQ MMLGDSSGED 60 HEVKAPKKRA ETWVQDETRS LIALRREMDG LFNTSKSNKH LWEQISAKMR ERGFDRSPTM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSCY KEIEEILKER SKSTQYKSPT PPKIDSYMQF 180 SDKGIEDNGL SFGPVEAGGR PSLNLERQLD HDGHPLAITA ADAVAATGIP PWNWREASGN 240 GGESQAFGGR VISVKWGDYT RRIGVDGTSE AIKEAIKSAF RLRTKRAFWL EDEDQVVRSL 300 DRDMPLGNYT LHLDEGVAVK ICLYDESDHL PVHTEDKVFY IEEDYRDFLA RRGWTCLREF 360 DGYRNIDNMD DLRPGAIYRG IS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MYLSDKPRPI DIYKEEGSRD MMIEVASNGD HHIQPHQPQP QPQQTHQQHQ MMLGDSSGED  60
HEVKAPKKRA ETWVQDETRS LIALRREMDG LFNTSKSNKH LWEQISAKMR ERGFDRSPTM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSCY KEIEEILKER SKSTQYKSPT PPKIDSYMQF  180
SDKGIEDNGL SFGPVEAGGR PSLNLERQLD HDGHPLAITA ADAVAATGIP PWNWREASGN  240
GGESQAFGGR VISVKWGDYT RRIGVDGTSE AIKEAIKSAF RLRTKRAFWL EDEDQVVRSL  300
DRDMPLGNYT LHLDEGVAVK ICLYDESDHL PVHTEDKVFY IEEDYRDFLA RRGWTCLREF  360
DGYRNIDNMD DLRPGAIYRG IS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-50	67	152	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022996917.1	0.0	trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1S3BAC6	0.0	A0A1S3BAC6_CUCME; trihelix transcription factor GT-1-like isoform X1
STRING	XP_004159556.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]