PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022767
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 211aa    MW: 24118.2 Da    PI: 4.8043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022767genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-135597754
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L
  Cla022767 55 LSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQEL 97
               57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.194897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-1351102No hitNo description
SuperFamilySSF474597.59E-1753114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1754117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-105597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MENILDEYGY YWETNMFLQT QEFDSWGLDE AFYGSYDSSS PDGTLSSLEA SKNILSERNR  60
RKKLNDRLLA LRAVVPNITK MDKASIIKDA IEYIQELRAQ EKRIESEISD LEGKIENRTT  120
NEEDDDHNGS GNSRKRTNDY NRQVREKPSS IPIEILDLSV NYMGEKTMVV SLTCGRRSDA  180
VLKVSQVIES LKLKIITANI IVVANRVMTL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1453116972Transcription factor MYC2
5gnj_B3e-1453116972Transcription factor MYC2
5gnj_E3e-1453116972Transcription factor MYC2
5gnj_F3e-1453116972Transcription factor MYC2
5gnj_G3e-1453116972Transcription factor MYC2
5gnj_I3e-1453116972Transcription factor MYC2
5gnj_M3e-1453116972Transcription factor MYC2
5gnj_N3e-1453116972Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818475e-50LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132595e-50LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451133.11e-121PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ700E39e-63BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A1S3BQT41e-119A0A1S3BQT4_CUCME; transcription factor bHLH35-like isoform X2
STRINGXP_008451126.11e-118(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]