PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023083

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 331aa MW: 37351.4 Da PI: 4.5611

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023083	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4.1e-12	163	206	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L Cla023083 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYVKEL 206 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.11	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.55E-15	161	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-12	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	163	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-16	164	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.33E-5	164	211	No hit	No description
CDD	cd04873	1.30E-4	257	320	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MELNENYLLE EVLGVRREMN WELAMSMEMN ELICSANGWN FDCSDSSAMD QHNLNYLLGG 60 QGQYCLPTAA GSTGDSMLET PPSSFEVYNG EYPITSMEEE ELGILEDEIH NLEVQANYCK 120 VEANVESPIP IFNTGGTCDD FPKQKIVNYS CTKKLQGQPS KNLMAERRRR KRLNDRLSML 180 RSIVPKISKM DRTAILADAI EYVKELMEKI KKLEREIEVN NNNNPNKLGI MRDVKPNNEY 240 LVRNSPKFNV ERRGDDTRIE ICCAAKPGLL LSTVHTLETL GLDIQQCVIS CFNDFAIQAS 300 CSEGSEQRTI VSTEEVKQAL FENAGYGGKC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	172	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	1e-51	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	1e-51	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466114.1	1e-154	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	1e-80	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1S3CRW4	1e-153	A0A1S3CRW4_CUCME; transcription factor bHLH61-like
STRING	XP_008466114.1	1e-154	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-80	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]