PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023112
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 214aa    MW: 23884.6 Da    PI: 6.3035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023112genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-183583355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Cla023112 35 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 83
               9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-213492IPR016177DNA-binding domain
SMARTSM003802.6E-363497IPR001471AP2/ERF domain
PROSITE profilePS5103223.4993491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313492IPR001471AP2/ERF domain
PfamPF008471.4E-123583IPR001471AP2/ERF domain
CDDcd000185.71E-333593No hitNo description
PRINTSPR003672.7E-103546IPR001471AP2/ERF domain
PRINTSPR003672.7E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSTKEESQIS QHSSNNNQSK PNKRLHADSS KHPMYRGVRM RAWGKWVSEI REPRKKSRIW  60
LGTFPTPEMA ARAHDVAALS IKGNSAILNF PELAHSLPRP VSFAPRDVQA AAAKAAHMDP  120
NFLHYSPNSP VSTSPSSAAD DDSDELTEIV KLPTLGSNYD HFISNNEFVL MDSTEGWVYP  180
PPWLRTMEDC GYNTNNIIDD LGIGVGDSNC LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192991972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818248e-83LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132588e-83LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023535238.12e-98dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-67DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0A0LHV39e-91A0A0A0LHV3_CUCSA; AP2 domain class transcription factor
STRINGXP_004136219.11e-91(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]