PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023239

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 176aa MW: 20493.4 Da PI: 9.6472

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023239	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2e-50	21	159	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...... 95 pGfrFhPtdeelv +yL++kve+k++ + e+ik++diyk++PwdLpk + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s+ Cla023239 21 LPGFRFHPTDEELVGFYLRRKVEKKPIAI-EIIKQIDIYKYDPWDLPKVSNVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIFSSlkspny 119 69*************************.89***********888889************************************9888887 PP NAM 96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Cla023239 120 nnnniqdSNNIIGLKKSLVYYRGTAGKGTKTDWMMHEFRL 159 76655554455*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-52	17	164	IPR003441	NAC domain
PROSITE profile	PS51005	48.332	20	176	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	22	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEVTSKLVDV VADQEDDQAV LPGFRFHPTD EELVGFYLRR KVEKKPIAIE IIKQIDIYKY 60 DPWDLPKVSN VGDKEWYFFC IRGRKYRNSI RPNRVTGSGF WKATGIDKPI FSSLKSPNYN 120 NNNIQDSNNI IGLKKSLVYY RGTAGKGTKT DWMMHEFRLP FHNIPHEDTV RLPSSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	13	159	8	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681865	4e-87	LN681865.1 Cucumis melo genomic scaffold, anchoredscaffold01599.
GenBank	LN713261	4e-87	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466795.1	4e-99	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
Swissprot	Q9SK55	1e-77	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S3CS33	1e-97	A0A1S3CS33_CUCME; transcription factor JUNGBRUNNEN 1-like isoform X2
STRING	XP_008466794.1	2e-97	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-76	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]