PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023408

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 320aa MW: 36095.7 Da PI: 9.2766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023408	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.4e-53	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ +++ Cla023408 17 LPPGFRFHPTDEELVVHYLKKKATSLPLPV-AIIAEVDLYKYDPWELPAKASYGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIASseGNR 115 79**************************.88***********9888999*********************************99877888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy g+ p+g kt+W+mheyrl Cla023408 116 KVGVKKALVFYGGKPPRGIKTNWIMHEYRL 145 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-64	13	183	IPR003441	NAC domain
PROSITE profile	PS51005	61.637	17	183	IPR003441	NAC domain
Pfam	PF02365	6.4E-28	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MENSKSAPET NSERPNLPPG FRFHPTDEEL VVHYLKKKAT SLPLPVAIIA EVDLYKYDPW 60 ELPAKASYGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIAS SEGNRKVGVK 120 KALVFYGGKP PRGIKTNWIM HEYRLADNNL GSGNNNKPRG FNIGGKKNSL RLDDWVLCRI 180 YKKTNSNKPG MDHEREDCFD YMVGSIPSSI QVNGYSQPMT TSTTTMTTNF SMYSELPSLS 240 LPMKRLLQPP SWEEEEYRST DDRPLSKRVQ LINGGGSGDN SIAALLSQLP SLQQPTRQGC 300 IIGDEIFRPA FQLPETNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-71	16	186	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF213557	0.0	EF213557.1 Cucumis melo NAC transcription factor (JA) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147807.1	0.0	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q9LD44	1e-103	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0A0LGE3	0.0	A0A0A0LGE3_CUCSA; Uncharacterized protein
STRING	XP_004147807.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24880	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-101	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]