PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023449

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 911aa MW: 101499 Da PI: 6.5338

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023449	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.6e-29	592	641	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Cla023449 592 KTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 641 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-25	593	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-21	814	897	No hit	No description
SMART	SM00666	5.1E-26	814	897	IPR000270	PB1 domain
PROSITE profile	PS51745	26.129	814	897	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.6E-23	816	893	No hit	No description
CDD	cd06407	2.46E-38	816	895	No hit	No description
Pfam	PF00564	1.9E-18	816	896	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MDDGMLSPAT MLDAPADTAM DLDYMDGLLL DGCWLETADG TEFLHTSPSS FGVNLDPLIG 60 WPATEMNGDF NMTQITRSNQ EEPRKILTDE MSLGRKRIDM GQEGCSGQSE NNGFEGSELC 120 RRLWIGPGEH LGSATSVMER LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF 180 SQNSSCTRLT KYRDVSVKYE FTADEDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV 240 NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV 300 IGHPNKKVFN RSNEAVLSEI QNTLKVACET HGLPLAQTWA SCIQQSREGC RHSDENYSCC 360 VSTVDRACFV ADQRIQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS 420 HHAKLFGLHA AVAIRLRCIY ISKTDFVLEF FLPVNCRDPE EQRVLLTSLS TIIQRSCRSL 480 RLVTDKECRE ENMQQSCRSL HLVTDVKLGE ESNFPFGEAG LIANERSGMQ EMSKGGKTSE 540 VLSSSGYQHH EFNYDLNGVV EDSEECATVG NGSFSDVGLG RAGEKRRTKV DKTITLQVLR 600 QYFAGSLKDA AKSIGVCPTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQL VIDSVEGASG 660 AFQIGSLYSN FQELASPNLS GSGPPFSAKM GDCLKTSNNQ NEVGMSNLQG AASKSPSSSC 720 SQSSSSSQCF SSRSHQNPPH WNETGSEDQM GGDNPCDGEL KRVKSEVEIH VSIMEGSNVP 780 RRSQSCKSLC KHPPTECLMH SAKESNGMAE TVEVQRVKVS FGEEKIRFRV HNRWRYEELL 840 NEIAKRFSIS DISKFDLKYL DDESEWVLLT SDTDLQECFH VYKSSQVQTI KLSLQVSRRH 900 KRTSLASSGF S

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MDDGMLSPAT MLDAPADTAM DLDYMDGLLL DGCWLETADG TEFLHTSPSS FGVNLDPLIG  60
WPATEMNGDF NMTQITRSNQ EEPRKILTDE MSLGRKRIDM GQEGCSGQSE NNGFEGSELC  120
RRLWIGPGEH LGSATSVMER LIRAVGYIKD FVRDKDVLVQ VWVPINRGGR SVLITNDLPF  180
SQNSSCTRLT KYRDVSVKYE FTADEDSKNA LGLPGRVFSR KVPEWTPDVR FFRSDEYPRV  240
NHAHEHDVRG TVALPIFEQG SKNCLGVIEV VMVTQQIKYG SELENVCKAL EAVKLRSSDV  300
IGHPNKKVFN RSNEAVLSEI QNTLKVACET HGLPLAQTWA SCIQQSREGC RHSDENYSCC  360
VSTVDRACFV ADQRIQEFHE ACSEHHLLKG EGIVGMAFKS NEPCFSSDIT SFCNTEYPLS  420
HHAKLFGLHA AVAIRLRCIY ISKTDFVLEF FLPVNCRDPE EQRVLLTSLS TIIQRSCRSL  480
RLVTDKECRE ENMQQSCRSL HLVTDVKLGE ESNFPFGEAG LIANERSGMQ EMSKGGKTSE  540
VLSSSGYQHH EFNYDLNGVV EDSEECATVG NGSFSDVGLG RAGEKRRTKV DKTITLQVLR  600
QYFAGSLKDA AKSIGVCPTT LKRICRQHGI KRWPSRKIKK VGHSLQKLQL VIDSVEGASG  660
AFQIGSLYSN FQELASPNLS GSGPPFSAKM GDCLKTSNNQ NEVGMSNLQG AASKSPSSSC  720
SQSSSSSQCF SSRSHQNPPH WNETGSEDQM GGDNPCDGEL KRVKSEVEIH VSIMEGSNVP  780
RRSQSCKSLC KHPPTECLMH SAKESNGMAE TVEVQRVKVS FGEEKIRFRV HNRWRYEELL  840
NEIAKRFSIS DISKFDLKYL DDESEWVLLT SDTDLQECFH VYKSSQVQTI KLSLQVSRRH  900
KRTSLASSGF S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452962.1	0.0	PREDICTED: protein NLP4 isoform X3
TrEMBL	A0A1S3BUI7	0.0	A0A1S3BUI7_CUCME; protein NLP4 isoform X3
STRING	XP_004145599.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein