PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00067_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 341aa    MW: 38649.4 Da    PI: 7.1809
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00067_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.5e-10112135326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                   +C++++r+ +C++Gd C FaHg
  Cotton_A_00067_BGI-A2_v1.0 112 STICSDYRRGSECPRGDDCEFAHG 135
                                 569******99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-6108139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314109137IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6109136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-7110137IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8112135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4142173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6145168IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052145169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTTVYDPSHH LTSKNLCFKD LEIPPRKKQL HCCPNAAAME LPHHEARLHK YLPSNEDDDG  60
TEDPYGTDHF RIYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPTRYQY SSTICSDYRR  120
GSECPRGDDC EFAHGVFECW LHPTRYRTEA CKDGKNCKRK VCFFAHSSRE LRLLPESPPP  180
LKYKNPDKNY NHCCLFCRSV TSSSSLSPTS TLLGLSHFSR SPSLSPPLSP LKHQQRTPRY  240
GGDRISIFGT EMTTSYDDVL LKEVMSCLGT MNLSEVTSPM APTANTNIPW LDVSFKGAPS  300
MVSPSGSDEY FNGGGDDEKN NGNGVVLDHD LDLGWVNELL M
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8878950.0AY887895.1 Gossypium hirsutum putative CCCH-type zinc finger transcription factor (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640565.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A1U8PNL60.0A0A1U8PNL6_GOSHI; zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2P5W3E60.0A0A2P5W3E6_GOSBA; Uncharacterized protein
STRINGGorai.002G020100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-65C3H family protein