PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00210_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 347aa    MW: 39901.3 Da    PI: 9.0644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00210_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-16595197
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                                ff +l+ s++l+ + l++p +f+++++ +   s+   l+ ++g +W+v +  rk+++++++++GW eF +   ++ g f++F+++
  Cotton_A_00210_BGI-A2_v1.0  5 FFHKLILSSTLQDKKLRIPDNFVKKFKDE--LSVAAALTVPDGHVWRVGI--RKGDNKVWFQEGWPEFLDRYYIRIGYFLIFRYE 85
                                8899999****************999755..99*****************..********************************* PP

                                SSSEE..EEEEE CS
                          B3 86 grsefelvvkvf 97
                                g+s f   v++f
  Cotton_A_00210_BGI-A2_v1.0 86 GNSAF--SVSIF 95
                                *9999..88887 PP
2B363.14.5e-20242331498
                                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                 vl ps+  + ++++lp  fae+ +g++     ++l+ ++g++W+v++iyr+++ +  +++GW eF  +n+L egD++vF+l +
  Cotton_A_00210_BGI-A2_v1.0 242 VLRPSYLYRGCIMYLPSCFAEHLSGVSG---FIKLQLPDGKQWSVRCIYRGGKAK--FSQGWYEFTVENNLGEGDVCVFELLR 319
                                 78899***************88888854...4***************99888866..89**********************99 PP

                                 SSEE..EEEEE- CS
                          B3  87 rsefelvvkvfr 98 
                                 ++ef l+v+vfr
  Cotton_A_00210_BGI-A2_v1.0 320 SREFVLKVTVFR 331
                                 9*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-20396IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-21396IPR015300DNA-binding pseudobarrel domain
CDDcd100176.89E-17596No hitNo description
PfamPF023621.9E-13595IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352598IPR003340B3 DNA binding domain
SMARTSM010193.3E-13698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22231331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-23232331IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-22237331No hitNo description
PROSITE profilePS5086312.985239333IPR003340B3 DNA binding domain
SMARTSM010198.8E-23239333IPR003340B3 DNA binding domain
PfamPF023621.1E-17242331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPRPFFHKLI LSSTLQDKKL RIPDNFVKKF KDELSVAAAL TVPDGHVWRV GIRKGDNKVW  60
FQEGWPEFLD RYYIRIGYFL IFRYEGNSAF SVSIFNLYNS EINYQSNALL GSQYNHGKSY  120
PFDELEDDEC MSSAMQHLFG GSKLNRCVNW SGEVNLNAAK SANNQPIRGS ETPPPKKPGR  180
KKQKFDPNDQ DLSVGHEDDS EMRYRFYESA SARKRTVTAE ERERAMNAAK AFEPSNPFCR  240
VVLRPSYLYR GCIMYLPSCF AEHLSGVSGF IKLQLPDGKQ WSVRCIYRGG KAKFSQGWYE  300
FTVENNLGEG DVCVFELLRS REFVLKVTVF RVMDGAGLMH RSQYNAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-7220533215142B3 domain-containing transcription factor VRN1
4i1k_B9e-7220533215142B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450177.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
SwissprotQ8L3W11e-155VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0D2Q6330.0A0A0D2Q633_GOSRA; Uncharacterized protein
STRINGGorai.002G006500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-150B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]