PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00212_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 124aa    MW: 14193.5 Da    PI: 8.8672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00212_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.1e-1235943087
                                ..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                          B3 30 keesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                                 ++ + l ++d +g  W++++ +  ++++ + v+ +GW +Fv+ ++L++gD+vv++++++
  Cotton_A_00212_BGI-A2_v1.0 35 CHGRIVLNVKDDEGTFWNFRCLIrtERYGPKLVIVSGWIDFVRTKDLRQGDIVVLYREED 94
                                34567899*************7755666666*************************6643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00413109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-14394IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-143107No hitNo description
SuperFamilySSF1019366.54E-12494IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-93194IPR003340B3 DNA binding domain
PROSITE profilePS508639.26341109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEIFATVLTI TDIERRLSVS NGCLLLQALS HFNGCHGRIV LNVKDDEGTF WNFRCLIRTE  60
RYGPKLVIVS GWIDFVRTKD LRQGDIVVLY REEDVIAGME YKIEVKKKNS FSSLNRIKGS  120
LGLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286336.11e-33auxin response factor 3-like
TrEMBLA0A2P5W7I03e-84A0A2P5W7I0_GOSBA; Uncharacterized protein
STRINGEOX981179e-37(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3542022