PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00234_BGI-A2_v1.0
Common NameF383_31069
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 212aa    MW: 23526.5 Da    PI: 6.4073
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00234_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.4e-07433534
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                                 C+ +e+  +++fC  ++  lC++C ++ H
  Cotton_A_00234_BGI-A2_v1.0  4 LCDVCERAAAIIFCAADEAALCRSCDEKVH 33
                                7******99******************998 PP
2zf-B_box28.62.9e-095291237
                    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Cotton_A_00234_BGI-A2_v1.0 52 DVPRCDICENAPAFFYCEVDGSSLCFQCDMIVHVGgkrtH 91
                                5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
PfamPF006431.4E-5334IPR000315B-box-type zinc finger
CDDcd000211.47E-5345No hitNo description
SMARTSM003362.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875196IPR000315B-box-type zinc finger
PfamPF006432.2E-75285IPR000315B-box-type zinc finger
CDDcd000213.25E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCER AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGFADP SDVPRCDICE  60
NAPAFFYCEV DGSSLCFQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPAH LEELGLQPVD  120
LNDVRKDQKW QPNFAGRENQ QNHKHSLVPA LDGNDDGDGK VGNKLIDLNT NPQRLHGQAS  180
TIQEQAMDVS SKNNHDSASV VPVGSFKREP DK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638988.11e-158PREDICTED: B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM54e-86BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0B0MY831e-156A0A0B0MY83_GOSAR; Uncharacterized protein
STRINGGorai.002G004200.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-70DBB family protein