PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00322_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 214aa    MW: 26044.8 Da    PI: 9.7397
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00322_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.41.2e-202731386
                    trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                +r e++ ++ ++k++k+lWe +s +++e+g++rs++qCk+kw+nl +ryk ++  e++  +++++++p++++l+
  Cotton_A_00322_BGI-A2_v1.0  2 IRAELDPNFMETKRNKQLWEFISTRLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEE--DKRQQQFPFYNDLQ 73
                                78999****************************************************9..567778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.40E-16154No hitNo description
PfamPF138371.1E-15675No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MIRAELDPNF METKRNKQLW EFISTRLKEK GYNRSAEQCK CKWKNLVTRY KGCEMVEEED  60
KRQQQFPFYN DLQAIFSARK QTTLKKLCSD KEEDKGRYRG KEKGKKGVSI SGSTSKSIND  120
GNDIKEILKC FMRQQMEMEI QWREALEERE NERRLKEMEW RRTMEALENE RVMMDIRWRE  180
KEEQRRIREE ARSERIDALV TTLLNKLTRD DHKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622156.11e-155PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804502e-43TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8PG571e-151A0A1U8PG57_GOSHI; trihelix transcription factor GT-3b-like
STRINGGorai.002G262900.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.18e-40Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]