PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00334_BGI-A2_v1.0
Common NameF383_03393
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 295aa    MW: 33421.3 Da    PI: 7.5564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00334_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-082873346
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                +WT++E + + +a +++ ++   +W ++a++++ g+t  +++  ++ 
  Cotton_A_00334_BGI-A2_v1.0 28 KWTPQENKCFENALALYDKDtpdRWFKVAAMIP-GKTVGDVIKQYRE 73
                                8********************************.******9999986 PP
2Myb_DNA-binding47.34.8e-15136180347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Cotton_A_00334_BGI-A2_v1.0 136 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                                 8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0242479IPR017884SANT domain
SMARTSM007176.2E-102577IPR001005SANT/Myb domain
SuperFamilySSF466894.02E-112781IPR009057Homeodomain-like
CDDcd001672.58E-72874No hitNo description
PfamPF002492.3E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129420.447129185IPR017930Myb domain
SuperFamilySSF466891.64E-17131184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17132184IPR006447Myb domain, plants
SMARTSM007172.1E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-13133180IPR009057Homeodomain-like
PfamPF002491.9E-12136180IPR001005SANT/Myb domain
CDDcd001672.61E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNRELEILSP ASYLQTSNWL FQESKGTKWT PQENKCFENA LALYDKDTPD RWFKVAAMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YSSDSFTLEW VNDGQVFDGF RNYYYTPGGK  120
RGTGTRPDQE RKKGVPWTEE EHRQFLMGLK KYGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FIRQVTGGKD KRRSSIHDIT TVNIPDTISS SPDQSKPLSP SNSSTVMQPQ QQPKATSVTK  240
EILDFEWNQR NEGAAIIFDQ TSSGNALLSP YCGMISSYGP QFGSYNALFQ SMQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-162693875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623447.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-105DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5WVR00.0A0A2P5WVR0_GOSBA; Uncharacterized protein
STRINGGorai.002G261600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]