PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00505_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25566.8 Da    PI: 9.2424
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00505_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1957110356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+ ++t++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Cotton_A_00505_BGI-A2_v1.0  57 KKKRLTSDQLDSLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 110
                                 56679************************************************9 PP
2HD-ZIP_I/II118.63.4e-3857147292
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kk+rl+++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev
  Cotton_A_00505_BGI-A2_v1.0  57 KKKRLTSDQLDSLEKSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQEFDAISREKQKLQDEV 139
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreelk 92 
                                  +L+  l+
  Cotton_A_00505_BGI-A2_v1.0 140 IKLKGILR 147
                                 ***97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1950114IPR009057Homeodomain-like
PROSITE profilePS5007117.34652112IPR001356Homeobox domain
SMARTSM003892.8E-1755116IPR001356Homeobox domain
CDDcd000861.52E-1557113No hitNo description
PfamPF000466.3E-1757110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-2162111IPR009057Homeodomain-like
PRINTSPR000313.7E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000313.7E-592108IPR000047Helix-turn-helix motif
PfamPF021837.4E-9112146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDWNDTFRPF VSRPEPSLNF LYSMEMKQHQ GFMEVGNEMV LPGLNKNSFN NNVNQDKKKR  60
LTSDQLDSLE KSFQEEIKLD PDRKMKLSRE LGLQPRQIAV WFQNRRARWK AKQLERLYDS  120
LKQEFDAISR EKQKLQDEVI KLKGILREQV TRNQVSTVYT EISGEETVES TSIRSSNKPK  180
IAGNNHHPHP ACNYLFNVDE YNPVSSPYWG TVQLPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5879795e-75JX587979.1 Gossypium hirsutum clone NBRI_GE22268 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622575.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-22-like
SwissprotQ9LZR05e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A1L6KYG41e-146A0A1L6KYG4_GOSHI; HD-Zip I TF
TrEMBLA0A2P5RT801e-146A0A2P5RT80_GOSBA; Uncharacterized protein
TrEMBLA0A2P5WN571e-146A0A2P5WN57_GOSBA; Uncharacterized protein
STRINGGorai.002G244200.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-55homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]