PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00525_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 190aa    MW: 20257.7 Da    PI: 6.2587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00525_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-183383155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                + ykGVr++  +g+Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  Cotton_A_00525_BGI-A2_v1.0 33 PVYKGVRRRA-NGKWVSEIREP-----RkpTRIWLGTFPTPEMAAIAYDVAALALKG 83
                                68*****887.8*********9.....448************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-123383IPR001471AP2/ERF domain
SMARTSM003802.5E-333497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-303493IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-213493IPR016177DNA-binding domain
PROSITE profilePS5103222.3793491IPR001471AP2/ERF domain
PRINTSPR003671.2E-73546IPR001471AP2/ERF domain
CDDcd000181.70E-313593No hitNo description
PRINTSPR003671.2E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQYYNKGYSK CITMQYNKGS SSGGGSAATG RHPVYKGVRR RANGKWVSEI REPRKPTRIW  60
LGTFPTPEMA AIAYDVAALA LKGPHAELNF PNSAASLPVP ASTSPTDIQA AATSAATALG  120
AANDALVGSN NPVSAERPST GNDFVDEDMM FDMPNVLVNM AEGMLLSPPR FDHPPPADDS  180
GDSENLWKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-162493474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622120.11e-139PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR07e-56ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1U8J2Y81e-134A0A1U8J2Y8_GOSHI; ethylene-responsive transcription factor ERF024-like
STRINGGorai.002G241800.11e-107(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-47ERF family protein