PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00526_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 206aa    MW: 22662.2 Da    PI: 4.5997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00526_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44.1e-144492255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 +kGVr   ++g+Wv+e+r+p   +k+ r++lg+f  + +Aaka++ a+++l+g
  Cotton_A_00526_BGI-A2_v1.0 44 IFKGVRT--RKGKWVSEVREP---NKKSRIWLGTFSCPGMAAKAYDVAALALRG 92
                                59***74..46******9998...347*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-94392IPR001471AP2/ERF domain
CDDcd000181.62E-2543102No hitNo description
PROSITE profilePS5103218.28144100IPR001471AP2/ERF domain
SMARTSM003802.2E-2644106IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1644102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2544102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVQSSKSHEI SSSSSQSEAG STSLGQSQKR RAGRKKFKET RHPIFKGVRT RKGKWVSEVR  60
EPNKKSRIWL GTFSCPGMAA KAYDVAALAL RGDAASLNFP ESARTLPRPK SLSVKDIQIA  120
AMEAAETFID DKTSPDSVSS AVPAFPENMV FEDEDEVFNM PGILESMAEG LMITPPSMQK  180
GYYPDDDDDD DDDDGNDYVE VNLWGD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622119.11e-151PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI41e-48DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z51e-48DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1U8J7V01e-120A0A1U8J7V0_GOSHI; dehydration-responsive element-binding protein 1F-like
STRINGGorai.002G241700.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.11e-40C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]