PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00688_BGI-A2_v1.0
Common NameF383_05560
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 552aa    MW: 59953 Da    PI: 6.8113
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00688_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-10410467562
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                 kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  Cotton_A_00688_BGI-A2_v1.0 410 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 467
                                 9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-18406470IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737408471IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-11410461No hitNo description
Gene3DG3DSA:1.20.5.1708.6E-11410466No hitNo description
PfamPF001708.1E-9410464IPR004827Basic-leucine zipper domain
CDDcd147033.19E-24411460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MGDSEEGNTD LMQRIQSSFG TSSSSIPKQV LSMNRLEIPQ LNPNQIRAVR HFSHFGQNFN  60
GGGGGGGGGG DGNKRVGIPP SHPNQIPPIS PYSQIPVSRP SSHQMGSSQG FSLGQTHSRS  120
LSQPSSFFSF DSLPPLSPAP VSQISNDVCM EDSHSLLPPS PFPKASSPRV GESLPPRKSH  180
RRSNSDIPFG FNTVTPPVRG SGFENSGVPR PVQLVKKETS WERGIDGNVE GMGERKSEGE  240
VMDDLFSAYM NLDNIDALNS SEDKNNNNEN HEDLDSRASG TKTNGGDSSD NEAESSANES  300
GNSVTRGGVY STEKREGNKR SAGGDIAPTS RHYRSVSMDS FMGKLNFSDE SPKLPPSPGS  360
RPGQLSPSNS IDGNSAAFSL ELGNGEFSEA ELKKIMANEK LAEIAMTDPK RAKRILANRQ  420
SAARSKERKM RYISELEHKV QTLQTEATTL SAQLTLLQRD SVGLTNQNNE LKFRIQSMEQ  480
QAQLRDALNE TLTAEVRRLK LATQELGGDS DPSKGMVSQQ LPISRQMFQL HQQQFHQQQQ  540
NGNTAAKSES NQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634111.10.0PREDICTED: transcription factor RF2a
RefseqXP_017634113.10.0PREDICTED: transcription factor RF2a
TrEMBLA0A0B0NWR20.0A0A0B0NWR2_GOSAR; Transcription factor RF2a
STRINGGorai.005G248900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-123bZIP family protein