PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00707_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 213aa MW: 23519.4 Da PI: 8.5598

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00707_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	101.1	2e-31	18	77	3	62
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62 g+++CqdCGnqakkdC+++RCRtCC+s+gf+C+th+kstWvpa++rr+r++++++++ Cotton_A_00707_BGI-A2_v1.0 18 GGGTRCQDCGNQAKKDCNYMRCRTCCRSKGFECQTHIKSTWVPAYRRRHRHHHQHQQQPL 77 57789********************************************96665554332 PP
2	DUF702	75.3	1.8e-23	85	149	93	154
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++ le+ ++P+ev s+a frcvrv s++d g +++aY+tav igGhvfkGiLydqG+++ Cotton_A_00707_BGI-A2_v1.0 85 RENPSSGLEVGDFPAEVTSPATFRCVRVCSMEDttaGGDQYAYRTAVMIGGHVFKGILYDQGPDQ 149 456677889999*******************6666789*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-50	20	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	23	64	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.6E-23	97	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MNEGVMMMSS RGYGGGTGGG TRCQDCGNQA KKDCNYMRCR TCCRSKGFEC QTHIKSTWVP 60 AYRRRHRHHH QHQQQPLQHN PKRLRENPSS GLEVGDFPAE VTSPATFRCV RVCSMEDTTA 120 GGDQYAYRTA VMIGGHVFKG ILYDQGPDQG HYSLGECSSR ETPLQQPNQA LTMATANTAT 180 ASATETLLPF AYPSPFNAAF MSAGTQFFLH PKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX579311	1e-100	JX579311.1 Gossypium hirsutum clone NBRI_GE11521 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714518.1	1e-161	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SD40	4e-53	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1U8LM36	1e-160	A0A1U8LM36_GOSHI; protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A2P5XRE8	1e-160	A0A2P5XRE8_GOSBA; Uncharacterized protein
STRING	Gorai.005G247100.1	1e-152	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-47	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]