PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00766_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 128aa MW: 14855.2 Da PI: 10.4295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00766_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.4e-16	16	109	1	94
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkeg 77 f k+lt dv r+++p ++eh +g+ +s + +++d+ +++W+++l rk++g+ vltkGW +Fv gLk+g Cotton_A_00766_BGI-A2_v1.0 16 FSKILTATDVRV--RFSFPTATMREHfkllEGS--QSLDFQVRDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVTRMGLKVG 94 667777777765..47*********977555..7889***********6688888899*************** PP -EEEEEE-SSSEE..EE CS B3 78 DfvvFkldgrsefelvv 94 D v+F ++g+++ + + Cotton_A_00766_BGI-A2_v1.0 95 DKVIFVVHGNHNDH--L 109 ****98886663..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-21	12	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.41E-19	15	116	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-16	15	99	No hit	No description
SMART	SM01019	5.6E-9	16	115	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.5E-13	16	107	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.784	53	115	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MHMQSSESEP GMKELFSKIL TATDVRVRFS FPTATMREHF KLLEGSQSLD FQVRDKYSKV 60 WTFRLYTRKN DGHPKPVLTK GWLDFVTRMG LKVGDKVIFV VHGNHNDHLG ILVKRNIKLL 120 GSEHWADL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481135.1	1e-86	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2P5Y960	1e-87	A0A2P5Y960_GOSBA; Uncharacterized protein
STRING	Gorai.005G241200.1	4e-83	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17815	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	2e-09	ARF family protein