PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00770_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 127aa MW: 14722.2 Da PI: 10.5334

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00770_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.7e-17	18	113	3	97
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfv 80 k+ltp dv rl++p ++eh +g+ +s + +++d+ +++W+++l+ +++ + vltkGW++Fvk gLk+gD v Cotton_A_00770_BGI-A2_v1.0 18 KILTPTDVRV--RLSFPTATTREHfkllEGS--QSLDFQVRDKYSKVWTFRLCTgKNGHLKPVLTKGWRDFVKRMGLKVGDKV 96 6676666664..59*********977555..7889***********6644444459***************** PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 +F ++g+++ +l ++v Cotton_A_00770_BGI-A2_v1.0 97 IFVVHGNHNDQLGIQVK 113 *99987666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.0E-21	13	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.37E-16	15	98	No hit	No description
SMART	SM01019	2.0E-8	16	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.88E-18	16	112	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.9E-14	18	112	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.362	53	116	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MHMQFSESEP VMKELCSKIL TPTDVRVRLS FPTATTREHF KLLEGSQSLD FQVRDKYSKV 60 WTFRLCTGKN GHLKPVLTKG WRDFVKRMGL KVGDKVIFVV HGNHNDQLGI QVKRNIMLLG 120 NEHWANL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481135.1	2e-72	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2P5Y966	2e-87	A0A2P5Y966_GOSBA; Uncharacterized protein
STRING	Gorai.005G241200.1	3e-71	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17815	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	2e-10	B3 family protein