PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00830_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 265aa MW: 28862 Da PI: 9.6491

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00830_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.1	2.9e-13	89	115	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk e+Cr++ ++G+C+yG++C+FaHg+ Cotton_A_00830_BGI-A2_v1.0 89 YKSEICRTWEEFGHCRYGSKCQFAHGK 115 99***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.9E-7	88	115	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.314	88	116	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-16	88	120	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-10	88	119	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-10	89	115	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MLPARSRTNY YSSPENLIKY LRSNSLSSSG NNSSSGKSSF RSSVSPQSEK TPVKVVEEDV 60 LVMDGVLVAS DTNIAGSGSS SSPRSVGFYK SEICRTWEEF GHCRYGSKCQ FAHGKEEVRP 120 SCFSFRSKPE AQMYKSYASA YGSISRPLNP IRETAAAIAQ KESSTRPDYT NQRSSSTMKP 180 GNTPLTTNIA MKPKTERDNA STIGPYTSAT NGSYWSPQDD GINVTLPSSS PGKTLSRADI 240 DAYIDSVLYG PTTRRRLPVF SAFSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617820.1	0.0	PREDICTED: tristetraprolin-like
TrEMBL	A0A1U8IBU7	0.0	A0A1U8IBU7_GOSHI; tristetraprolin-like
STRING	Gorai.013G063400.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-09	C3H family protein