PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00841_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 216aa    MW: 24442.2 Da    PI: 4.7079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00841_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.91.9e-1028243128
                         NAM  43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmh 124
                                 ePw++    ++e  e  f++ ++ k+++++r +r+t +g W ++   kev++k +ge++g  k +++ + +++k ++ +W+mh
  Cotton_A_00841_BGI-A2_v1.0   2 EPWNIF---DQELPES-FWILTKLKKKSKSRIERTTGDGCWLQQFA-KEVKNKdGGEVIGYDKYFTYTS-KKNKKSNGQWIMH 78 
                                 688874...2222344.5555666667789************9877.55555549999*********95.5555589****** PP

                         NAM 125 eyrl 128
                                 e+ l
  Cotton_A_00841_BGI-A2_v1.0  79 EFFL 82 
                                 *976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.5441101IPR003441NAC domain
PfamPF023653.4E-5380IPR003441NAC domain
SuperFamilySSF1019412.35E-113101IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
REPWNIFDQE LPESFWILTK LKKKSKSRIE RTTGDGCWLQ QFAKEVKNKD GGEVIGYDKY  60
FTYTSKKNKK SNGQWIMHEF FLKEQEAVGL SDLVICEIKN KDAAALSSDY EESKGEIKKN  120
KKRKLMEVPS DSTNDFATVP VENQTFDYMA PEVGGFSPFS ACLDQQPNPW TSAGVGGNLG  180
VPDYNSHHLE EANEAGDGNL FFTFQELDSI LNSDQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117124KKNKKRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963951e-35JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618043.11e-131PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8IHN01e-127A0A1U8IHN0_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.013G066200.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-07NAC domain containing protein 28