PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00936_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 282aa MW: 30953.9 Da PI: 9.1398

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00936_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.6e-38	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ekalkcprC+st+tkfCy+nnyslsqPryfCk+C+ryWt+GGalrnvP+Ggg+r nk+s+ Cotton_A_00936_BGI-A2_v1.0 70 PEKALKCPRCESTHTKFCYFNNYSLSQPRYFCKTCKRYWTRGGALRNVPIGGGCRTNKRSK 130 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	54	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVFSFVPLID PLNWQQPPTH DQQDQAFTKD NHHHIHNPQL PPPPPAGGGV GINRPGSMTE 60 RARLANIQKP EKALKCPRCE STHTKFCYFN NYSLSQPRYF CKTCKRYWTR GGALRNVPIG 120 GGCRTNKRSK GSKPTKSPSI GQMNPTPLQL PLLLHPLHYL GDYISVGTRA SSNMEFQIGN 180 SSHGDGSMLT NGLVQQFPFL TGLETPTGLY PLGSEGVEAS SYGVHHQLRS KPLESWIAQL 240 EAVSDQYWAG GGGGGGRGGD AWTDLSGDFV YKSFLPPNPV HY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618795.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A2P5WK37	1e-178	A0A2P5WK37_GOSBA; Uncharacterized protein
STRING	Gorai.013G022500.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24290	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-43	DNA binding with one finger 2.4