PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00996_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 172aa MW: 19300 Da PI: 7.4344

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00996_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+l+r+C+++C++apyf ++++kkfa vhk+FGasnv+k+l ++pee+red+++sl++eAear+rdPv+G++g i l Cotton_A_00996_BGI-A2_v1.0 11 SCAACKLLKRRCSPNCIFAPYFRSDEAKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAFEAEARLRDPVHGCIGAIALL 93 6******************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q+++ ql+++lal+++ Cotton_A_00996_BGI-A2_v1.0 94 QRKMIQLQHDLALARA 109 *********99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.256	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSDEAKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAFEAEARLR DPVHGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV 120 IFSSDDHHRV ITGPFDDFPV DCGVSFGSFN QNISYELNQE ANMYDFSQIP YI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	6	114	6	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017618826.1	1e-127	PREDICTED: LOB domain-containing protein 21
Refseq	XP_017621588.1	1e-127	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	2e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U8KNB2	1e-125	A0A1U8KNB2_GOSHI; LOB domain-containing protein 21-like
TrEMBL	A0A2P5XEG6	1e-125	A0A2P5XEG6_GOSBA; Uncharacterized protein
STRING	Gorai.013G016900.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	7e-66	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]