PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01014_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 477aa    MW: 54224.6 Da    PI: 6.5128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01014_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.33.1e-138484721374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA++v++g+le+a+  L+++s+las dgd+mqR+aayf eALa r+++ +++lykal++++ s   +see++++kl
  Cotton_A_01014_BGI-A2_v1.0  48 LIHLLVSCANHVAAGSLENANIGLEQISHLASTDGDTMQRIAAYFNEALAYRMLKAWPGLYKALNSTKIS--LVSEEIHVQKL 128
                                 689*************************************************************999998..7********** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 f+e++P+lk++++++NqaI+ea+ege++vHiiDf+  +++QW++L+q++++Rpegpp+lRiTgv++    +ke l ++++rL+
  Cotton_A_01014_BGI-A2_v1.0 129 FFELCPFLKLAYVITNQAIVEAMEGEKMVHIIDFNCFEPAQWINLFQTFNARPEGPPHLRITGVHE----QKEVLDHMARRLT 207
                                 ******************************************************************....9************ PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214
                                 + A++ ++pf+fn+ v+ +le+l+le+Lrvk+gEalaV++vlqlh+ll                                   
  Cotton_A_01014_BGI-A2_v1.0 208 EEAQKWDIPFQFNP-VVCKLENLDLESLRVKTGEALAVSSVLQLHSLLvtddemhkwkvnspsmsktdwshrvlqmnqrtlge 289
                                 **************.6888**************************************************************** PP

                        GRAS 215 ........................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                                                             sl+   +  ++L +++ lsPk++v++eqe++ ++++++er++eal++y+alfd+l
  Cotton_A_01014_BGI-A2_v1.0 290 wlkkepvhayspssdlaspsplspL---SLAPapKMGSFLTALRALSPKLIVITEQESNNSGSTLMERVMEALNFYAALFDCL 369
                                 ******************9996642...3333335778********************************************* PP

                        GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                                 e++++r+  er+kvE++l+g+ei+n++aceg er+erhe+lekW  rle aGF+ vpls++ + qa +ll++ + dgy+++ee
  Cotton_A_01014_BGI-A2_v1.0 370 ESTVSRTPLERKKVEKMLFGEEIKNIIACEGVERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKIKEE 452
                                 *********************************************************************************** PP

                        GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                                 +g+lv++W++rpL+s+SaWr
  Cotton_A_01014_BGI-A2_v1.0 453 NGCLVICWQERPLYSISAWR 472
                                 *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.09322452IPR005202Transcription factor GRAS
PfamPF035141.1E-13548472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGMVPEGQS FVTSSPLQFI PWMSFSPGLG SPFPWLRELK SEERGLYLIH LLVSCANHVA  60
AGSLENANIG LEQISHLAST DGDTMQRIAA YFNEALAYRM LKAWPGLYKA LNSTKISLVS  120
EEIHVQKLFF ELCPFLKLAY VITNQAIVEA MEGEKMVHII DFNCFEPAQW INLFQTFNAR  180
PEGPPHLRIT GVHEQKEVLD HMARRLTEEA QKWDIPFQFN PVVCKLENLD LESLRVKTGE  240
ALAVSSVLQL HSLLVTDDEM HKWKVNSPSM SKTDWSHRVL QMNQRTLGEW LKKEPVHAYS  300
PSSDLASPSP LSPLSLAPAP KMGSFLTALR ALSPKLIVIT EQESNNSGST LMERVMEALN  360
FYAALFDCLE STVSRTPLER KKVEKMLFGE EIKNIIACEG VERKERHEKL EKWILRLELA  420
GFGRVPLSYH GMLQAGRLLQ TNNYDGYKIK EENGCLVICW QERPLYSISA WRFWPYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-41484724375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617457.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8M5H90.0A0A1U8M5H9_GOSHI; scarecrow-like protein 3 isoform X1
STRINGGorai.013G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]