PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01032_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 374aa MW: 43446.6 Da PI: 8.2148

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01032_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.7	5.5e-27	104	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rW++qe+l+L+e+r +++ +++++++k+plW+e s+ m +e g++rs k+C+ek+enl k+ykk+k+++ +r ++ +++++f Cotton_A_01032_BGI-A2_v1.0 104 RWPRQETLTLLEIRIRLDPKFKEANQKGPLWDELSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKQRKTGR--QDGKNYRFF 184 8***********************************7788************************97..66678 PP trihelix 83 dqle 86 +qle Cotton_A_01032_BGI-A2_v1.0 185 RQLE 188 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-18	103	188	No hit	No description
CDD	cd12203	1.03E-20	103	169	No hit	No description
PROSITE profile	PS50090	6.435	103	162	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MEMVDQNGLP HLRRSLPMRT HFPVPHPEPT EPYFANINMA SPSPVPYHEP FIAPLPSRLV 60 RFSHNHYPSA SLTTGVAASA SIPSATTLFG GSRWGNINNG GNSRWPRQET LTLLEIRIRL 120 DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKQ RKTGRQDGKN 180 YRFFRQLELL YGETTNQCPT VLYQTSNNPM NQRNHHEEEK KPGDQSLSVS NSSEFETSSS 240 ENNTDDEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLFK EEEWRRQETA 300 LLDKEHEFWV KERAWVEARD VALMEVIKNF TRKRTLEVSS SSSSAERPVG YTQQGISSLI 360 HSLGQAWNQD SRNI

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MEMVDQNGLP HLRRSLPMRT HFPVPHPEPT EPYFANINMA SPSPVPYHEP FIAPLPSRLV  60
RFSHNHYPSA SLTTGVAASA SIPSATTLFG GSRWGNINNG GNSRWPRQET LTLLEIRIRL  120
DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LYKYYKKTKQ RKTGRQDGKN  180
YRFFRQLELL YGETTNQCPT VLYQTSNNPM NQRNHHEEEK KPGDQSLSVS NSSEFETSSS  240
ENNTDDEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLFK EEEWRRQETA  300
LLDKEHEFWV KERAWVEARD VALMEVIKNF TRKRTLEVSS SSSSAERPVG YTQQGISSLI  360
HSLGQAWNQD SRNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016720945.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	7e-83	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A1U8M2C3	0.0	A0A1U8M2C3_GOSHI; trihelix transcription factor PTL-like
TrEMBL	A0A2P5XY50	0.0	A0A2P5XY50_GOSBA; Uncharacterized protein
STRING	Gorai.013G013400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24291	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-69	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]