PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01078_BGI-A2_v1.0
Common NameF383_32163
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 422aa    MW: 46576.8 Da    PI: 8.1491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01078_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12354399655
                                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Cotton_A_01078_BGI-A2_v1.0 354 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 399
                                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16351414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-13352403No hitNo description
Gene3DG3DSA:4.10.280.103.5E-16353418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9354399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MESDLQHHHH HHLLDYHQPQ HNQKQMNSGL TRYQSAPSSY FSNILDRDFC QEILNRPSSP  60
ETERIIAKFL SSSGDAAGGG DANTENIPPQ NLCTATQSSP VRETPVKIEQ PTQIMTPINN  120
QTGLMQQPNY SSASQNFYQS QPPQYLLNQQ PSASAVDYTT PNPTGMKMGG SNNSNLIRHS  180
SSPAGLFSKI NIENSYGVMR GMGDYGSVNS SNREATFRSA SRPPTPSGLM TPIAEMGNKS  240
MGPFSSENAG FGENRPSNYS SGLPVTSWDD SMMISDNMSG IKRLREDDRS LSGLDGAETK  300
NADGGNHRPP PLLAHHLSLP KSSDMSAIEK FLQYQDSVPC KIRAKRGCAT HPRSIAERVR  360
RTKISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKDLQK QVKSLSDSRA KCSCAAQQQQ  420
QQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627831.10.0PREDICTED: transcription factor bHLH122 isoform X2
TrEMBLA0A0B0N1700.0A0A0B0N170_GOSAR; Transcription factor protein
STRINGGorai.009G071900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-64bHLH family protein