PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01098_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 325aa    MW: 34338.1 Da    PI: 9.3977
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01098_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-09130155227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 kt+lC+ f+    Ck+Gd+C+FaHg+
  Cotton_A_01098_BGI-A2_v1.0 130 KTRLCSKFSTPEGCKFGDKCHFAHGE 155
                                 8***********************96 PP
2zf-CCCH35.81.4e-11292316126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 +kt+lC +f++ G C +G+rC+FaHg
  Cotton_A_01098_BGI-A2_v1.0 292 FKTKLCENFSK-GSCTFGERCHFAHG 316
                                 69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.3486591IPR000571Zinc finger, CCCH-type
PfamPF146081.67888No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-13126158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-8127158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526128156IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026128155IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.99E-15191269IPR004088K Homology domain, type 1
SMARTSM003222.7E-11198268IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-15199267IPR004088K Homology domain, type 1
PROSITE profilePS5008414.508199263IPR004088K Homology domain, type 1
CDDcd001051.41E-14201264No hitNo description
PfamPF000134.3E-11201265IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.2E-16290323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8291321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831291318IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6291317IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEFGGGRKRV RPEAALNGNG GFKKSKQGNA LGSNHDKKDY GTKMCLLLND VVIHKILLCV  60
IPDVTCSKTN FIVFTSGCQF GESCHFLHYV PGGIKAVSQM LGNNPALPAA ARNSVVPPSF  120
PDGSSPPAVK TRLCSKFSTP EGCKFGDKCH FAHGEWELGK RTGPPYEDPR SMGPMPGRMA  180
GRLEPPSPGF GAAASFGASA TAKISIDASL AGAIIGKNGV NSKHICRVTG AKLSIRENES  240
DPSSRNIELE GTFDQIKQAS AMVHELIINV GSASGSSMKN TAKSGSGSGN NFKTKLCENF  300
SKGSCTFGER CHFAHGTEEL RKPGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631290.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ39e-87C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-86C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5QPH70.0A0A2P5QPH7_GOSBA; Uncharacterized protein
STRINGGorai.009G070300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-50C3H family protein