PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01099_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 234aa    MW: 26249.8 Da    PI: 5.6744
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01099_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18180216135
                        GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C+  nC+t +Tp+WR+gp g+ktLCnaCG++yrk+++
  Cotton_A_01099_BGI-A2_v1.0 180 CTnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKEEE 216
                                 55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-11176227IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-12176225No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13176224IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.9E-16180216IPR000679Zinc finger, GATA-type
CDDcd002025.15E-10184211No hitNo description
PROSITE profilePS5011411.596184230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDNSPWFNQA ATEMNGQNND NNNAGNSRVD LTLKLGLPLF DSLQNPALYH NIQQGPVNEG  60
AMAEAPQQHF NGSQYAAWLS PDQIGNSSSA HNMNYPNVFN NFSGPSVEFP PYDTINSYNY  120
VPPPPPPPLH ELPPNSYTLL DVPPRRAAQL QQREFESSSG WGLGRGQRGY GLYNDPNKRC  180
TNYNCNTNDT PMWRKGPLGP KTLCNACGIK YRKEEEKRKT KEGRDGEQQF DLNE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5986136e-50JX598613.1 Gossypium hirsutum clone NBRI_GE35854 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630258.11e-174PREDICTED: GATA transcription factor 29
RefseqXP_017630259.11e-174PREDICTED: GATA transcription factor 29
TrEMBLA0A0D2TL011e-136A0A0D2TL01_GOSRA; Uncharacterized protein
STRINGGorai.009G070200.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.14e-14GATA transcription factor 29