PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01173_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 223aa    MW: 24833.3 Da    PI: 10.0936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01173_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.4e-2953112159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dg++WrKYGqK+ k+++ pr+Y++C +a gCpvkkkv+r+ ed+++v+ tYeg+Hnh+
  Cotton_A_01173_BGI-A2_v1.0  53 VKDGFQWRKYGQKVTKDNPSPRAYFKCFMApGCPVKKKVQRCVEDKSIVVATYEGQHNHD 112
                                 58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2947112IPR003657WRKY domain
PROSITE profilePS5081126.68248114IPR003657WRKY domain
SuperFamilySSF1182902.35E-2549113IPR003657WRKY domain
SMARTSM007745.0E-3253113IPR003657WRKY domain
PfamPF031066.6E-2454112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MFETMSRKYI MLHQAYLRQK SNKRQRLEVP AAAGSKASQV FVKTDPRDQS LIVKDGFQWR  60
KYGQKVTKDN PSPRAYFKCF MAPGCPVKKK VQRCVEDKSI VVATYEGQHN HDVDSTAAGK  120
SMLASCSSAI FSGTRSVPFP PLDNPFPPPI TLDLTLSGSD LQNHRNLPSF MHDYSTSNDD  180
GNNKKKKIED YVASLTKDPN FTLALAAAVA RSIKTEHPKP SPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2131113176Probable WRKY transcription factor 4
2lex_A2e-2131113176Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698340.0KF669834.1 Gossypium hirsutum WRKY transcription factor 70 (WRKY70) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630221.11e-167PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A1U8PGT11e-166A0A1U8PGT1_GOSHI; probable WRKY transcription factor 40
STRINGGorai.009G062400.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-44WRKY DNA-binding protein 40