PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01174_BGI-A2_v1.0
Common NameF383_03987
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 313aa    MW: 34195.4 Da    PI: 8.4595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01174_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30155213259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnhe
  Cotton_A_01174_BGI-A2_v1.0 155 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHE 213
                                 7***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-29148214IPR003657WRKY domain
PROSITE profilePS5081125.97149215IPR003657WRKY domain
SuperFamilySSF1182902.62E-25151214IPR003657WRKY domain
SMARTSM007746.2E-35154214IPR003657WRKY domain
PfamPF031061.1E-24156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESAWVDTTL DLNINPSHNT IKVLKRESSG KLADSDVKVP VKQETGALLE ELNRISAENK  60
KLTEMLTVLC ERYSSLQNQY MELVSRNSGS DATAATSKKR KAECEDYATM IGFSGKAESS  120
CSDEDSCKKP KDCIKAKISR AYVRTNPSDN SLIVRDGYQW RKYGQKVTRD NPSPRAYFKC  180
SFAPSCPVKK KVQRSAEDPS ILVATYEGEH NHEQHSPPAL SSLSPNNGTS NPRSAPVSSS  240
SSAPAKSSPP TVTLELMKPT GLGNDTQNPT QQVDEPAIQQ ILVQQMAASL TRDPNFTAAL  300
ASAISGKVLD HKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-211532131675Probable WRKY transcription factor 4
2lex_A6e-211532131675Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8647580.0DQ864758.1 Gossypium hirsutum WRKY transcription factor 2 (WRKY) mRNA, complete cds.
GenBankKF6698570.0KF669857.1 Gossypium hirsutum WRKY transcription factor 71 (WRKY71) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628366.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A0B0PQE40.0A0A0B0PQE4_GOSAR; Putative WRKY transcription factor 40-like protein
TrEMBLA0A1U8PJE30.0A0A1U8PJE3_GOSHI; probable WRKY transcription factor 40 isoform X1
STRINGGorai.009G062300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-81WRKY DNA-binding protein 40