PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01185_BGI-A2_v1.0
Common NameF383_16744
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 645aa    MW: 70781.8 Da    PI: 5.7786
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01185_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.35.2e-16202240140
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40 
                                 kpr++W+ eLH++Fv av+qL G+ekA+Pk+ilelm+   
  Cotton_A_01185_BGI-A2_v1.0 202 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILELMDKFR 240
                                 79*******************.**************9755 PP
2Response_reg77.45e-26201281109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl vdD+p+ + ll+++l+k +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g
  Cotton_A_01185_BGI-A2_v1.0  20 VLAVDDDPTCLLLLETLLTKCKY-NVTTTSQAITALKMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANG 100
                                 799********************.***************888888*******************87754.558********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 + +++ + +  Ga d+l Kp+ +eel +
  Cotton_A_01185_BGI-A2_v1.0 101 DTKLVMKGITHGACDYLLKPVRIEELQN 128
                                 *************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.7E-4217141No hitNo description
SuperFamilySSF521721.42E-3517141IPR011006CheY-like superfamily
SMARTSM004482.4E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.45219134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.63E-2421134No hitNo description
SuperFamilySSF466892.33E-8199244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-15200244IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-12202238IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MRVERVISDE NDSFPVGMRV LAVDDDPTCL LLLETLLTKC KYNVTTTSQA ITALKMLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP  120
VRIEELQNIW QHVIRRKKFD RKDRNGSGSQ DKPYIDSSEA AGLGNVDQNG KFNKKRKDQN  180
EDEDEERDEN GHDNEDLSTQ KKPRVVWSVE LHRKFVAAVN QLGIEKAVPK KILELMDKFR  240
LYLKRISCVA NQQANMAAAL GSVDSTHLRM GTMNGLGNFH TLAGPDQIHN AAFRSFQHSG  300
VLRRLNTPAG VGISGLPSSG LVQLSPVQNL GNTSTNQSKL QSFVIPGNHN ANILQGMPMS  360
LEFDQLQNNR AASHVGQFPS VDNTTVLPVS SISGSLIDAG CSSSPLLGVT SNSLLLEGSS  420
QLPTLHARNL RDSVSGFPNR STLSDFTSIA PASNQLHGSK ADIQDQVSPI SCNAGKIISS  480
APQDWNAPKK DAPYQSNVPS CSINSLRAVN GDMAWLGQCL DQNNPIFNRN VGFDFVDPLS  540
IKCSEGENLA MEPSVIEKEG YLMVQPSRQG SYIPDNEDEN FAMEPSVIEK EGYLIVQPRR  600
QGSYIPGNLG SLEDLASAIT RQDHDKGKPT DGDFGYNDYS LRTCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jte_A3e-12191395126Response regulator receiver protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627399.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A0B0MIT80.0A0A0B0MIT8_GOSAR; Two-component response regulator ARR12-like protein
STRINGGorai.009G061000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-125response regulator 12