PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01261_BGI-A2_v1.0
Common NameF383_04476
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 697aa    MW: 76342.8 Da    PI: 5.6306
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01261_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-29205258155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ eLH++Fv+av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Cotton_A_01261_BGI-A2_v1.0 205 KPRVVWSVELHRKFVSAVNQL-GLEKAVPKKILDLMNVEGLTRENVASHLQKYRL 258
                                 79*******************.********************************8 PP
2Response_reg82.91e-27261341109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl vdD+p+ +++l+++l+k +y +v+++ ++  al++l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah+
  Cotton_A_01261_BGI-A2_v1.0  26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAITALKMLRENRnrYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHS 106
                                 799********************.***************999889*******************87754.558********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 + +++ + +  Ga d+l Kp+ +eel +
  Cotton_A_01261_BGI-A2_v1.0 107 DTKLVMKGITHGACDYLLKPVRIEELKN 134
                                 *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.8E-1721632IPR017053Response regulator B-type, plant
SuperFamilySSF521726.26E-3623146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-4323166No hitNo description
SMARTSM004481.7E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.07425140IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2526134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.73E-2827139No hitNo description
SuperFamilySSF466891.25E-19202262IPR009057Homeodomain-like
PROSITE profilePS5129411.58202261IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-30203263IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24205258IPR006447Myb domain, plants
PfamPF002491.3E-7207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MTMEEKLGGS NGEDGGRDRF PIGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAITAL  60
KMLRENRNRY DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSDTKL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RKKKPDSKDQ INASNQDKSR GGTGETGPTS SSSDQKVSKK  180
RKDQSEDEDE EGDDNGHEDP STQKKPRVVW SVELHRKFVS AVNQLGLEKA VPKKILDLMN  240
VEGLTRENVA SHLQKYRLYL KRLSSVATQQ ANMVAALGSK DPSYLRMGSL DGFGDFRTLT  300
GPGRISSASL SSYQPGGLFG RLNSSAALSL RGISSGVIQS GHSQTLSNPI NGFGKIQPAV  360
VPANQNQNGT LFQGIPTSIN QLSQNKPTNH FGEFNRGNDP NAFGVATNFQ DVRVTVGGSS  420
NTLPVSSGNP LLLQSNTQQT QHSGAFGNQS SSLGVTSLNQ EPFDMNVRGS SNFLDHGRCS  480
ENWQSAVQLS SFPSNALSTS EAFSHEQLPN NNLQESISWT SSHLSSSPLD LSSSMANPAN  540
LEDSRGNISQ VSLNNNVIQN IDYTTKQQWG DSRHDYNGNM NNSFSRGDSL VPASGPMMDQ  600
SNLISDKMND VSLFSQFSGD STYVVPHLDG EKSAFDTKPR SNEDFLFETK PQNGFNQNSF  660
EPLENIMMSM IKSDQNNETP LMDGEFGFDA YSLGSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25201264164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628022.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotQ6K8X61e-141ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A1U8PGG60.0A0A1U8PGG6_GOSHI; two-component response regulator ORR24-like
STRINGGorai.009G054200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]