PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01262_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 495aa    MW: 54561.9 Da    PI: 8.0078
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01262_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.8e-26170223155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ e H++Fv+av++L G +kA+Pk++l+lm+v+gL +e v+SHLQkYRl
  Cotton_A_01262_BGI-A2_v1.0 170 KPRVVWSDEVHRKFVSAVNEL-GLDKAVPKKVLDLMNVEGLKRETVASHLQKYRL 223
                                 79*******************.********************************8 PP
2Response_reg77.93.6e-26261341109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl vdD+p+ +++l+++l+k +y +v ++ +++ al++l+e++  +Dl+++ ++mp+md+++ll+     e++lp+i++++hg
  Cotton_A_01262_BGI-A2_v1.0  26 VLAVDDDPVCLKVLENLLRKCQY-HVSTTNQATTALKMLRENRnrYDLVITGVNMPDMDAFKLLELVGL-EMDLPVIMLSTHG 106
                                 799********************.***************999889*******************87754.558********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 + e++ + +  Ga d+l Kp+ +eel +
  Cotton_A_01262_BGI-A2_v1.0 107 DTELVMKGITHGACDYLLKPVRIEELKN 134
                                 *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-3823147No hitNo description
SuperFamilySSF521721.42E-3223143IPR011006CheY-like superfamily
SMARTSM004482.9E-2924136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.21125140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-2226134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.05E-2527139No hitNo description
Gene3DG3DSA:1.10.10.602.7E-26168225IPR009057Homeodomain-like
SuperFamilySSF466896.18E-16168225IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-22170223IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MTLQEKRGGS NGEDGGKDRF PIGMHVLAVD DDPVCLKVLE NLLRKCQYHV STTNQATTAL  60
KMLRENRNRY DLVITGVNMP DMDAFKLLEL VGLEMDLPVI MLSTHGDTEL VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RKNKPDFKDH INALNQDNGH EDEDRSIQEK PRVVWSDEVH  180
RKFVSAVNEL GLDKAVPKKV LDLMNVEGLK RETVASHLQK YRLYIGHSIV ATLGSKDPSY  240
LRMGPLGGFG YFHTLTGPGR ISSASLPSYQ PGGMFGRLNT SATLSLHGIS SSVIQPGHCQ  300
TSNNPINGSG KIQPAVVPAN QKKNGTLFQG IPTSVDLNQP SQNKPTNGCG EFNRVNDPNF  360
QDARMAVGGS CNTLHVSSGN PLLLQSNTQQ TKHSGAFGNQ ASLSNSILDL CSFKAKSANL  420
EDSKGDISNV GLNNYIILNM DYATKQQRGD SRHDNNGNTN HSFCRADSLV PFLFVCFVLF  480
CCVYKICQKT YDAWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-20166223158ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630092.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotB8B3I41e-111ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-111ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A1U8JLI80.0A0A1U8JLI8_GOSHI; Two-component response regulator
STRINGGorai.009G054200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19812879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-103response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]