PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01341_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 824aa    MW: 87952.9 Da    PI: 6.8004
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01341_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24208261155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kp+++Wt++LH++F+ea++q+ G e+A+Pk+ile m+  gLt+e+v+SHLQkYR+
  Cotton_A_01341_BGI-A2_v1.0 208 KPKIVWTNTLHNQFLEALRQI-GLERAVPKKILERMNSTGLTRENVASHLQKYRI 261
                                 799******************.********************************6 PP
2Response_reg80.45.8e-27161211107
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                 +l+vdD+ + + ++  +l++ +y ev++++++ +al  l+ +  +Dl+++D+ mpgm+G+el k+i++e  klp+i++++ ++
  Cotton_A_01341_BGI-A2_v1.0  16 ILVVDDDSTSLAIVSAMLREFRY-EVTSVKTPAAALSVLRSNPsIDLVVTDLHMPGMNGIELQKRINKEF-KLPVIIMSSDDD 96 
                                 89*********************.***************99999**********************9999.9*********** PP

                                 HHHHHHHHHTTESEEEESS--HHHH CS
                Response_reg  83 eedalealkaGakdflsKpfdpeel 107
                                 e+ +le l  Ga  f++Kp+dp  l
  Cotton_A_01341_BGI-A2_v1.0  97 ENVMLESLAGGAVFFIVKPVDPIGL 121
                                 ********************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-3312158No hitNo description
SuperFamilySSF521721.57E-3113130IPR011006CheY-like superfamily
SMARTSM004489.4E-2814125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.9615129IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2216122IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.71E-2717118No hitNo description
PROSITE profilePS512949.232205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-24206265IPR009057Homeodomain-like
SuperFamilySSF466892.69E-17206265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23208261IPR006447Myb domain, plants
PfamPF002496.1E-6213260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MVSTRSVNSP AMKITILVVD DDSTSLAIVS AMLREFRYEV TSVKTPAAAL SVLRSNPSID  60
LVVTDLHMPG MNGIELQKRI NKEFKLPVII MSSDDDENVM LESLAGGAVF FIVKPVDPIG  120
LKNVWQYAVA AKKGKSLLIE DMDRESSSSS PADGKLSLGG NTKSVSSVNN EKNDPKNGSK  180
RKGASGKGRD KDDNDDESKS PPPKKTKKPK IVWTNTLHNQ FLEALRQIGL ERAVPKKILE  240
RMNSTGLTRE NVASHLQKYR IFLKRIAERG CFASKAVIDR FLKSNFAAGH PLLLKTAQEY  300
SRLEHMERLR VLASYPGLHE SLMGHSSTRN VPLFYGHPGA SSSNAAQQPL GYGQSRLLSN  360
QTNQPLFPGS GNMLNNPNLN NHLGYGNGNG IGIGSSSSVN GGGGFSSGLL NGGNSSLTYP  420
NQVQARPDFY NAGPSSSSPF RFGSAGFHSS GSTLGNGLFG SSSSSYPSLN SSSSGSIVVN  480
GLFGSSSRSH PSLNSSSSGA TLGNGLFGSS SSSYPSLNNS SYPTLNPGYT NNAANSNRGM  540
RFYEHLLNGS APPITVDYGS MNQTRPTGDY GSMNRTHNEN INVPTMRTTP LDSLDFMREF  600
PIPPVDNSTL IQGLGTGSTR LTEINSDQLL NNVPNLDNEP RGGDGLLQDL VLESKKLANE  660
EKAGEQSVEN SDYCLPSLFP EIYPTLDELL NCDFPDPLSD EDNHPWSEEA IGQVQSELEE  720
LINNPNPAAG DGRSNKSNPI TNKQQTGGEQ VTVTHPLSNV LQVMTAPAPA PAPAPAPAPA  780
PAPAPAPALA VYNSANNANN GAPVGANSSS YEVYHCCYHL HSIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21207267464ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5836311e-66JX583631.1 Gossypium hirsutum clone NBRI_GE16723 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636609.10.0PREDICTED: two-component response regulator ORR24
TrEMBLA0A0D2T8D10.0A0A0D2T8D1_GOSRA; Uncharacterized protein
STRINGGorai.008G280500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.15e-49response regulator 21