PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01342_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 216aa    MW: 24421.2 Da    PI: 6.5285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01342_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1754104155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + y+GVr++   g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a++ a+ +l+g
  Cotton_A_01342_BGI-A2_v1.0  54 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPTADMAARAHDVAAIALRG 104
                                 68*****887.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1254104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3155114IPR001471AP2/ERF domain
PROSITE profilePS5103222.24755112IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2155114IPR016177DNA-binding domain
SMARTSM003807.3E-3155118IPR001471AP2/ERF domain
PRINTSPR003671.3E-85667IPR001471AP2/ERF domain
CDDcd000185.17E-2956114No hitNo description
PRINTSPR003671.3E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDFVVQDYDM VDSGSVSESG TDRPVNFSDE YVMLASSYPK RRAGRKKFRE TRHPVYRGVR  60
RRNPGKWVSE VREPNKKSRI WLGTFPTADM AARAHDVAAI ALRGKSACLN FADSAWNLPV  120
PASSDPKDIQ KTAAEVAETF RTAEYSCGNS RNDAKRSENT EMEKGFYLDE EALFGTQRFW  180
ANMAAGMMMS PPRSGHDGGW EEHEVDDYVP LWSYSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14531111271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4090600.0DQ409060.1 Gossypium hirsutum DREB1-like transcription factor (DREB1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636572.11e-161PREDICTED: dehydration-responsive element-binding protein 1D-like isoform X1
SwissprotQ9FJ932e-68DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLQ6VY011e-154Q6VY01_GOSHI; Putative dehydration responsive element binding protein GhDREB1A
STRINGGorai.008G280600.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-60C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]