PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01347_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 433aa    MW: 47345.4 Da    PI: 7.6835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01347_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.46e-09112134326
                                 S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                 +e C+++ + G C +Gd+C+F H+
  Cotton_A_01347_BGI-A2_v1.0 112 EEVCNYWVQ-GNCTFGDKCRFLHS 134
                                 689******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842248IPR000571Zinc finger, CCCH-type
SMARTSM003561.12347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-7110134IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6110135IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7113132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.3E-37133425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3140179IPR001680WD40 repeat
SuperFamilySSF509783.11E-37141426IPR017986WD40-repeat-containing domain
PROSITE profilePS5029410.812147188IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.344147188IPR001680WD40 repeat
PRINTSPR003201.4E-5166180IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
SMARTSM00320130219255IPR001680WD40 repeat
SMARTSM003202.1E-4262299IPR001680WD40 repeat
PfamPF004000.033266299IPR001680WD40 repeat
PROSITE profilePS5008211.745269308IPR001680WD40 repeat
PROSITE profilePS5029415.9269348IPR017986WD40-repeat-containing domain
PRINTSPR003201.4E-5286300IPR020472G-protein beta WD-40 repeat
SMARTSM003200.001302339IPR001680WD40 repeat
PfamPF004000.0047304338IPR001680WD40 repeat
PRINTSPR003201.4E-5326340IPR020472G-protein beta WD-40 repeat
SMARTSM0032053343386IPR001680WD40 repeat
SMARTSM0032090389425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDLDGGAGNN KRVFNRHGTD SSKNQKVCFH WRAGKCTRFP CSFLHSEPSH PSGSAAAASS  60
SSTANGSGAP KRFADDSRFS GSVQRRGPNF KNNHNNSWGR MGANNKVVRK TEEVCNYWVQ  120
GNCTFGDKCR FLHSWSLGEG FSMLNHLDGH QKLLSGIVLP AGMDKLFTGS KDETLRAWDA  180
NSGQCTGVIN LGGEVGCMIS EGLWLFVGIP NAVKAWNTQT NQEFSLSGPA GQVYAMIVGN  240
GLLFAGSQEG ILAWKFNAVT NSFEPAASLK GHTLPVVSLM VGANRLYSGS MDHSIKVWSL  300
ETLQCLQTLT EHTNVVMSLL CWDQFLLSCS LDQTIKVWVA SENGNLEVTY THNEEHGLLN  360
LRGMHDLESK PVLLCACNDN YVRLYDLPSF SERGKIFAKQ EIRAIEVGPS GLFFTGDGTG  420
FKVWKWAEPV ATT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-171354248320Tako8
6g6n_A2e-171354248320Tako8
6g6n_B2e-171354248320Tako8
6g6n_C2e-171354248320Tako8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145871e-140JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637582.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like isoform X2
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0D2RNW20.0A0A0D2RNW2_GOSRA; Uncharacterized protein
STRINGGorai.008G281100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein